390x Filetype PPTX File size 2.22 MB Source: w3.biosci.utexas.edu
Overview
Southern-blot DNA Digestion Based
hybridization
COBRA
MSP
Bisulfite Sequencing
Bisulfite Based Real-time MSP
MethyLight
MassARRAY
Pyrosequencing
Southern Blot Hybridization
1978
-One of the older techniques for sequencing (1978), not as widely used any more due to the
development of PCR and other cheap/fast sequencing techniques, not outdated but just not as
widely employed
Process:
• Step 1 use restriction enzymes to cut DNA
• Step 2 electrophoresis to separate DNA fragments by size
• Step 3 transfer DNA fragments from gel to a membrane
• Step 4 hybridize radiolabeled probe to membrane
• Step 5 sample is washed to remove extraneous radio probes
Southern Blot Hybridization
1978
Advantages:
• Cheap
• simple
• 1 probe can detect multiple similar sequences
• well suited for analyzing long stretches of DNA
Disadvantages
• Requires a large amount of DNA
• Time consuming
• labor intensive
• limited sensitivity
Interesting probe gif
http://www.slic2.wsu.edu:82/hurlbert/micro101/images/101SouthernBlot10.gif
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